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# Template Laboratory Isolate Organizer

Id | 1.3.6.1.4.1.19376.1.3.1.5 ref XDLAB- | Effective Date | 2008‑08‑08
Status | Active | Version Label | 2017
Name | LaboratoryIsolateOrganizer | Display Name | Laboratory Isolate Organizer
Description
The Laboratory Isolate Organizer SHALL be used only if the entry represents a microbiology specimen study with isolates discovered on the specimen. The isolate is represented by the Isolate role played by the Isolate entity. The isolate identification is carried by the code attribute of the Isolate entity.
Context | Parent nodes of template element with id 1.3.6.1.4.1.19376.1.3.1.5
Classification | CDA Entry Level Template
Open/Closed | Open (other than defined elements are allowed)
Used by / Uses |
Used by 0 transactions and 4 templates, Uses 8 templates
Used by | as | Name | Version
--- | --- | --- | ---
1.3.6.1.4.1.19376.1.3.1 | Containment | Laboratory Report Data Processing Entry (2017) | 2008‑08‑08
1.3.6.1.4.1.19376.1.3.3.2.1 |  | Laboratory Specialty Section (2017) | 2008‑08‑08
1.3.6.1.4.1.19376.1.3.3.2.2 |  | Laboratory Report Item Section (2017) | 2008‑08‑08
2.16.840.1.113883.3.1937.777.63.10.589 | Containment | Laboratory Report Data Processing Entry (2017) | 2024‑06‑18 14:13:32
Uses | as | Name | Version
1.3.6.1.4.1.19376.1.3.3.1.2.1 | Containment | Non-Human Subject (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.3.1.3.1 | Containment | Human Patient with Non-Human Subject (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.3.1.7 | Containment | Laboratory Performer (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.10.9.17 | Containment | Author with Name, Addr, Telecom (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.1.4 | Containment | Laboratory Battery Organizer (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.1.6 | Containment | Laboratory Observation (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.3.10.9.2 | Include | Multimedia Embedded Content (2017) | DYNAMIC
1.3.6.1.4.1.19376.1.5.3.1.4.2 | Containment | IHE Comment Entry (2014) | DYNAMIC
Relationship | Specialization: template 2.16.840.1.113883.10.12.303 CDA Observation (2005‑09‑07) ref ad1bbr-
Example |
Laboratory Isolate Organizer Example
<organizer classCode="CLUSTER" moodCode="EVN"> <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/> <statusCode code="completed"/> <effectiveTime value="20071108000000.0000-0500"/> <specimen typeCode="SPC"> <specimenRole classCode="ISLT"> <id extension="55584739" root="1.3.6.1.4.1.19376.1.3.4"/> <specimenPlayingEntity classCode="MIC"> <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT" displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/> </specimenPlayingEntity> </specimenRole> </specimen> <performer typeCode="PRF"> <templateId root="1.3.6.1.4.1.19376.1.3.3.1.7"/> <!-- .. --> </performer> <author typeCode="AUT"> ... </author> <participant typeCode="AUTHEN"> <templateId root="1.3.6.1.4.1.19376.1.3.3.1.5"/> <!-- .. --> </participant> <participant typeCode="RESP"> <!-- .. --> </participant> <participant typeCode="DEV"> <!-- .. --> </participant> <component> <observation classCode="OBS" moodCode="EVN"> <templateId root="1.3.6.1.4.1.19376.1.3.1.6"/> <code code="89029-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Microbiology Culture"/> <!-- .. --> </observation> </component></organizer>
Item | DT | Card | Conf | Description | Label
--- | --- | --- | --- | --- | ---
hl7:organizer |  |  |  |  |
@classCode | cs | 1 … 1 | F | CLUSTER
@moodCode | cs | 1 … 1 | F | EVN
hl7:templateId | II | 1 … 1 | M |  |
@root | uid | 1 … 1 | F | 1.3.6.1.4.1.19376.1.3.1.5
hl7:id | II | 0 … 1 | R | The Isolate MAY have a unique identifier from within the laboratory. |
hl7:code | CD | 0 … 1 |  | The <code> element SHALL identify the Isolate with a unique international vocabulary. The code, codeSystem, and displayName SHALL be present. You MAY also populate codeSystemName. |
hl7:statusCode | CS | 1 … 1 | M | ‘completed’ when all expected results for this isolate are in a final state ‘active’ if some are missing ‘aborted’ if the findings on the isolate did not reach completion. Some results MAY be there. |
| CONF |
@code SHALL be "completed"
or
@code SHALL be "active"
or
@code SHALL be "aborted"
hl7:effectiveTime | TS | 0 … 1 | R | Time of results on this isolate. |
Choice | … 1 |  | Elements to choose from: hl7:subject containing template 1.3.6.1.4.1.19376.1.3.3.1.2.1 Non-Human Subject (DYNAMIC) hl7:subject containing template 1.3.6.1.4.1.19376.1.3.3.1.3.1 Human Patient with Non-Human Subject (DYNAMIC)
hl7:subject |  | 0 … 1 |  | subject in case of a non-human subject attached to the isolate Contains 1.3.6.1.4.1.19376.1.3.3.1.2.1 Non-Human Subject (DYNAMIC) |
@typeCode | cs | 0 … 1 | F | SBJ
hl7:subject |  | 0 … 1 |  | subject in case of a non-human subject attached to the isolate Contains 1.3.6.1.4.1.19376.1.3.3.1.3.1 Human Patient with Non-Human Subject (DYNAMIC) |
@typeCode | cs | 0 … 1 | F | SBJ
hl7:specimen |  | 1 … 1 |  | participation of the isolate i.e. the specific sub-specimen on which a microorganism was isolated and cultivated |
@typeCode | cs | 0 … 1 | F | SPC
hl7:specimenRole |  | 1 … 1 |  |  |
@classCode | cs | 0 … 1 | F | SPEC
hl7:id | II | 0 … 1 |  | unique identifier for this isolate, known to the laboratory |
hl7:specimenPlayingEntity |  | 1 … 1 |  | The entity is a microorganism |
@classCode | cs | 1 … 1 | F | MIC
hl7:code | CE | 1 … 1 |  | Identification of the microorganism, in a standard vocabulary |
hl7:performer |  | 0 … * |  | performer participation used if specific performer on this isolate, to supersede all performers of higher level. Contains 1.3.6.1.4.1.19376.1.3.3.1.7 Laboratory Performer (DYNAMIC) |
hl7:author |  | 0 … * |  | author participation used if specific author on this isolate, to supersede all authors of higher level. Contains 1.3.6.1.4.1.19376.1.3.10.9.17 Author with Name, Addr, Telecom (DYNAMIC) |
hl7:participant |  | 0 … * |  | Other participants "AUTHEN", "RESP", and "DEV". AUTHEN: The verifier of the battery organizer. In the case where a laboratory report has multiple verifiers. Each verifier is attached to the subset of batteries/observations he or she verified, by the means of a <participant> element. |
where [@typeCode='AUTHEN'] |
@typeCode | cs | 1 … 1 | F | AUTHEN
hl7:participant |  | 0 … * |  | Other participants "AUTHEN", "RESP", and "DEV". RESP: The person responsible for the provision of the battery. In the case where this battery is subcontracted to an external laboratory, this external laboratory (with its address and telcom) and the actual performer is represented by a <performer> element, whereas the Director of this subcontractor laboratory is carried by the <participant> element being attached to the same level as the <performer> element. |
where [@typeCode='RESP'] |
@typeCode | cs | 1 … 1 | F | RESP
hl7:participant |  | 0 … * |  | Other participants "AUTHEN", "RESP", and "DEV". DEV: A device or equipment, which was used to produce this battery of results (e.g. an analyzer). |
where [@typeCode='DEV'] |
@typeCode | cs | 1 … 1 | F | DEV
hl7:component |  | 0 … * | R | Contains 1.3.6.1.4.1.19376.1.3.1.4 Laboratory Battery Organizer (DYNAMIC) |
@typeCode | cs | 0 … 1 | F | COMP
hl7:component |  | 0 … * | R | Contains 1.3.6.1.4.1.19376.1.3.1.6 Laboratory Observation (DYNAMIC) |
@typeCode | cs | 0 … 1 | F | COMP
hl7:component |  | 0 … * | R |  |
@typeCode | cs | 0 … 1 | F | COMP
Included |  |  | from 1.3.6.1.4.1.19376.1.3.10.9.2 Multimedia Embedded Content (DYNAMIC)
hl7:observationMedia |  |  |  |  |
@classCode | cs | 1 … 1 | F | OBS
@moodCode | cs | 1 … 1 | F | EVN
hl7:value |  | 1 … 1 | M |  |
@mediaType | cs | 1 … 1 | R |
| CONF |
@mediaType SHALL be "image/gif"
or
@mediaType SHALL be "image/jpeg"
or
@mediaType SHALL be "image/png"
or
@mediaType SHALL be "image/bmp"
@representation | cs | 1 … 1 | F | B64
hl7:component |  | 0 … * | R | Contains 1.3.6.1.4.1.19376.1.5.3.1.4.2 IHE Comment Entry (DYNAMIC) |
@typeCode | cs | 0 … 1 | F | COMP
| Schematron assert | role | error |
| test | hl7:component |
| Message | SpecimenObservationCluster _Organizer SHALL contain at least one of Battery, Observation, Multimedia or Annotation comment. |